Autopatcher only offers what WU has to offer along with a few optional fixes. If you install a hotfix that replaces an officially released fix, AP will show the official fix as not installed whereas the hotfix may still satisfy WU after installing it.
BTW, I noticed that a few fixes you have listed have already been superseded by another fix.
i.e KB2572073 and KB2633880 were superseded by KB2604092.
Edited by click-click, 19 August 2012 - 10:41 PM.